Base Calling Settings

_images/BasecallingSettings.png

Flowcell ID [2] (Required)

Choose the Flowcell ID from the select list.

Kit Number [2] (Required)

Choose the kit number from the select list.

_images/AdvancedBasecallingSettings.png

Mode (Required)

Set the Guppy base calling mode.

Note

  • Default: high-accuracy.

Device (Required)

Set the sequencing device.

Note

  • Default: PromethION.

cpu_threads_per_caller [1] (Default)

Note

  • Set value: 1.

records_per_fastq [2] (Default)

Note

  • Set value: 0.
  • Use a single file (per worker, per run id).

recursive [2] (Default)

Note

  • Set value: search for input files recursively.
[1]Guppy v3.0.3 Release https://community.nanoporetech.com/posts/guppy-3-0-release
[2](1, 2, 3, 4) How to configure Guppy parameters https://community.nanoporetech.com/protocols/Guppy-protocol-preRev/v/gpb_2003_v1_revg_14dec2018/how-to-configure-guppy-parameters